PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G191800.1
Common NameB456_010G191800, LOC105774248
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 429aa    MW: 47331.9 Da    PI: 5.5219
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G191800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.5e-14223270254
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h + Er RR ++N++++ Lr+++P++     +K++ a+i+  A++YIk+L
  Gorai.010G191800.1 223 TTKHFATERERRVHLNDKYQALRTMVPSP-----TKNDRASIVGDAIDYIKEL 270
                         579**************************.....9****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-15221289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.81E-12222270No hitNo description
PfamPF000103.2E-12224270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-12224278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MKVYEESGCF DPHSLTDCQE LMGLPGATPT NCHNSLEDTL NVSSYNHHHH EDASAALDME  60
PHQHYLLDNT TNNNSHLIPY LTQDLPYDQS HWESFNVVPS STSPEAAAAA AAAGAYTPTP  120
DLLGLFHLPR CSFLPNPSIS FETTPGSPSV VYDPLFHLNL PPQPPVFREL LQSLPHGYTV  180
PADDKDAAGI GGLYHDGDNG IIQFTRDISM AGRAKDRDKA GKTTKHFATE RERRVHLNDK  240
YQALRTMVPS PTKNDRASIV GDAIDYIKEL LGTVRELQLL VDKKRCGQDR SKRLKTEDAA  300
SAADAGDVEF KSLGDPDQCY NTSLRSSWLQ RKSKDSEVDV RIVDDEVTIK LVQRKKINCL  360
LFVSRLLDEL QLDLLHVAGG NIGDYYSFLF NTKIYEGSSV YACAIANKLI DVVDRQYAAA  420
PPTSSTSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452121.10.0PREDICTED: transcription factor bHLH91-like
TrEMBLA0A0D2UFE90.0A0A0D2UFE9_G
STRINGVIT_15s0107g00380.t011e-153(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-98bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]